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Lecture 7. Protein Synthesis and Cell Regulation

1.  Objective

The objective of this lecture is to introduce the principles of DNA structure and replication, protein synthesis, and regulation of enzyme synthesis and expression.

2. DNA Structure

2.1.  Components of DNA

bulletDNA model (7-1)

2.2.  Patterns of Base Pairing

bulletbonding of nucleotide bases (7-2)

2.3.  DNA Replication

bulletFigure of DNA replication (7-3)

3.   Protein Synthesis

3.1.  Overview

bulletsimplified overview of protein synthesis (7-4)

3.2.  Genetic Code

bulletmRNA code   (7-5)

3.3.  Details of Base Alignment and Amino Acid Alignment

bulletprotein transcription and translation (7-6)

3.4.  Diagrams of Protein Synthesis in the Cell

bulletsynthesis of hydrolytic enzyme in eukaryotic cell (7-7)
bullettranslation on the ribosome (7-8)

4.  Ribosomal RNA and Phylogeny

4.1.  Structure of 16S Ribosomal RNA

bulletmodel of 16S rRNA (7-9)

4.2.  Comparison of 16S rRNAs in Different Organisms

bulletcomparison of rRNA (7-10)

4.3.  Phylogenetic Tree Based on rRNA Sequences

bulletphylogenetic tree (7-11)

5.  Regulation of Metabolism

5.1.  Allosteric Control of Enzyme Activities

5.1.1.  Figure of protein control (7-12)

5.1.2.  Figure of lipid control (7-13)

5.1.3.  Figure of carbohydrate control (7-14)
bulletinhibition, citric acid
bulletactivation, AMP and ADP

5.2.  Induction and Repression of Protein Synthesis

bulletrepression (7-15)
bulletinduction

5.3.  Regulation via the Lactose Operon

bulletlactose operon (7-17)

6.  Critical Concepts or Questions

6.1.  What is meant by semiconservative replication of DNA?

6.2.  How does DNA make RNA?  Distinguish between the sense and nonsense strands.

6.3.  Be sure that you can synthesize a protein from DNA or deduce the sense strand of DNA from a sequence of amino acids.  Understand the definitions and functions of transcription, translation, codons, start codon, stop codons, mRNA, tRNA, charged tRNA, redundancy, ribosome, rRNA.

6.4.  Why and how are the activities and concentrations of enzymes regulated?

6.5.  Where does protein synthesis occur in prokaryotic cells?  in eukaryotic cells?

7.  Vocabulary

adenine base pair cytosine
DNA polymerase DNA replication guanine
histone nucleosome nucleotide
thymine urasil anticodon
cancer codon differentiation
exon gene gene mutation
genetic code intron messenger RNA
metastasis mutagen oncogene
operator operon promoter
proto-oncogene ribosomal RNA ribosome
selective gene expression transcription start codon
transfer RNA translation redundancy
stop codon    

8.  Webpage Links

The Genetic Code - S.D. Black, U. of Texas Health Center at Tyler Table relating nucleic acid triplet to the corresponding amino acid.

Molecular Biology - The Biology Project, Biology, University of Arizona Activities, Problems sets, and Tutorials: Molecular Genetics; Nucleic Acids; Recombinant DNA Technology; Eukaryotic Gene Expression

Prokaryotic Genetics and Gene Expression from the MIT Hypertextbook - M.I.T. Tools for studying prokaryotic genetics, biochemical genetics, Lac operation, etc.

The making of the nucleosome - D. Pruss Simplified images and a tour.

9. Illustration Documentation